As Andy says in the comment, for low speed signals over short distances you can use almost any cable for any purpose. Where your step pulses are likely at most 10kHz signals they are many orders of magnitude slower than what we would consider the tipping point where it could become problematic.
Even 100kHz or 1MHz for the distance between a control board and a motor board will not see any problems.
If you run the "low frequency" step signal through a wire of a pair and put the direction signal through the other wire, as long as the direction signal is actively driven to Vcc and GND it should not notice too much of it. Again, it's a small distance and at low frequency over small distances twisted pair is just another bunch of wires that are close to each other.
EDIT: Little more added while modifying the schematic below
If you want to use "low frequency" and get a little reflection immunity with only a single component, you could add a resistor at the transmitter side of the pulse signal, so that the reflections get "tied down" at the transmission side.
But this requires the output resistance of your driver to be known as compared to the signal on the other wire to work properly.
To avoid a lot of look-up or testing you can try 75 Ohm if the other wire is a hard ground or 50 Ohm if it is also driven by a modern digital chip's output. Many logic chips have internally something between 15 and 40 Ohm output impedance, but that's very general and may well be wrong in specific situations.
I averaged it into about 25 Ohm, in which case if you use ground on the other wire and as such just one output and then add a 75 Ohm resistor that adds up to 100 Ohm on the TX side. If you use two outputs (direction signal on the other wire) that will be two pins of 25 Ohm, so you only need 50 Ohm to add up to 100 Ohm.
To note: This is not a very neat trick and it involves a lot of guess work (since the PCB also has certain impedances and the whole trick with the resistors will then mismatch those, etc, etc), so you should avoid it if you can and use proper Differential drivers and receivers when single ended start to be so quick that you start seeing problems.
End of Addition
Some sideways thinking about higher speeds (Also Edited):
If you ever do need higher speed with single ended pulses, you can quite easily modify the system to at least reduce the problems over the cable. It's far from perfect, but it will be a little better than nothing, if for some mysterious reason a true differential driver isn't possible:
simulate this circuit – Schematic created using CircuitLab
A even number of twists is better, but I am not aware of practical cable situations where this is worth the trouble: there are other sources of interference which are probably more important that the small difference it would make.
Another way to look at it: the amount of magnetic interference is proportional to the area between the two wires. With a perfect even number of twists the area is effectively zero. With an odd number of twists it is essentially one twist area. That is still a vast improvement over no twist at all :)
Best Answer
A possible negative effect could be the resistance of the wire. That's not caused by the twisted pair, but rather the wire diameter. If they're really signal wires the diameter will be rather small, and have a non-negligible resistance. The resistance will cause a voltage drop, which may become noticeable at longer distances.
If the wire is thick enough you won't have any negative effects, but no positive effects either. The power supply has a very low impedance, so it won't pick up from the signal, and at DC it won't inject any disturbances into the signal wires either.