Magento Orders – How to Change Logo of Print Order PDF on Success Page

The image is inserted by the method Mage_Sales_Model_Order_Pdf_Abstract::insertLogo.
There is some resizing done there but if your image is smaller than 270x270 nothing should be resized.
If you have any custom extension that changes the invoice pdf disable it.

1. Not sure what you mean, here. Are you referring the Google Chrome "print dialog?" - not much you can do about that one. As for preventing the printable order contents from appearing in a popup/new tab, you'd can take one approach that comes to mind.

Print Dialog Override, AJAX Method

Extend app/design/frontend/base/default/template/checkout/success.phtml -- may be different depending on your theme. Change this line:

<?php echo $this->__('Click <a href="%s" onclick="this.target=\'_blank\'">here to print</a> a copy of your order confirmation.', $this->getPrintUrl()) ?>

To this:

<?php echo $this->__('Click <a href="javascript:;" onclick="new Ajax.Request('%s', {onSuccess:function(){ ... }});">here to print</a> a copy of your order confirmation.', $this->getPrintUrl()) ?>

The above is more like pseudo-code, and I do not advise to write it like that, but you can get the idea that you'd make an AJAX request for the printable contents, and upon its return, you can write it directly to the success page in a modal or something nice -- then prompt to print.

2. See the template referenced in #1.

3. "That page" -- The checkout success page? See below.

Changing the Checkout Success Template

Extend the app/design/frontend/base/default/layout/checkout.xml -- or else add the following to your local.xml

<checkout_onepage_success translate="label">
    <reference name="root">
        <action method="setTemplate"><template>page/1column.phtml</template></action>
    </reference>
</checkout_onepage_success>