Debian – mod_jk or mod_proxy

You can install Tomcat 6 to run under jsvc as user tomcat (not as root). Here's what I did last time I set it up:

I installed the Tomcat application under /usr/java/tomcat (CATALINA_HOME) and an instance under /var/lib/tomcat (CATALINA_BASE):

cd /usr/java
sudo tar xzvf ~/downloads/apache-tomcat-6.0.18.tar.gz
sudo ln -s apache-tomcat-6.0.18 tomcat
sudo /usr/sbin/useradd -d /var/lib/tomcat -c "Apache Tomcat" -m -s /sbin/nologin tomcat
cd /var/lib/tomcat
sudo mkdir logs work temp
sudo chown tomcat:tomcat logs temp work
(cd /usr/java/tomcat && sudo tar cvf - conf webapps) | sudo tar xvf -
sudo chmod -R g+rw webapps conf
sudo chown -R tomcat:tomcat webapps conf
cd webapps/
sudo rm -rf docs examples manager host-manager
cd ../conf
sudo chmod g+r *

Then I built the jsvc wrapper:

cd
tar xzvf downloads/apache-tomcat-6.0.18.tar.gz
tar xzvf apache-tomcat-6.0.18/bin/jsvc.tar.gz
cd jsvc-src
chmod +x configure
./configure --with-java=$JAVA_HOME
make
./jsvc --help
sudo cp jsvc /usr/local/sbin/ 

Finally, I tightened the permissions on the instance directories:

cd /var/lib/tomcat
sudo chmod -R 0700 conf
sudo chmod -R 0750 logs
sudo chmod -R 0700 temp
sudo chmod -R 0700 work
sudo chmod -R 0770 webapps/
sudo chown -R tomcat:tomcat conf
sudo chown -R tomcat:tomcat logs

When you run Tomcat now, you'll need to start it using jsvc, so add this script as /etc/init.d/tomcat and symlink it appropriately:

#!/bin/sh
#
# tomcat       Startup script for the Apache Tomcat Server running under jsvc
#
# chkconfig: 345 85 15
# description: Apache Tomcat
# pidfile: /var/run/jsvc.pid

JAVA_HOME=/usr/java/jdk1.6.0_13
CATALINA_HOME=/usr/java/apache-tomcat-6.0.18
CATALINA_BASE=/var/lib/tomcat
JAVA_OPTS="-Djava.awt.headless=true"
JMX_OPTS="-Dcom.sun.management.jmxremote.port=1099 -Dcom.sun.management.jmxremote.authenticate=false -Dcom.sun.management.jmxremote.ssl=false"

DAEMON_APP=/usr/local/sbin/jsvc
TOMCAT_USER=tomcat

# Everything below should be okay
PID_FILE=/var/run/jsvc.pid
LOCK_FILE=/var/lock/tomcat

PATH=/sbin:/bin:/usr/bin
. /lib/init/vars.sh

. /lib/lsb/init-functions

[ -x $JAVA_HOME/bin/java ] || exit 0
[ -x $DAEMON_APP ] || exit 0
[ -d $CATALINA_HOME/bin ] || exit 0
[ -d $CATALINA_BASE ] || exit 0

RETVAL=0
prog="jsvc"

CLASSPATH=\
$JAVA_HOME/lib/tools.jar:\
$CATALINA_HOME/bin/commons-daemon.jar:\
$CATALINA_HOME/bin/bootstrap.jar

start() {
  # Start Tomcat
  log_daemon_msg "Starting Apache Tomcat"
  $DAEMON_APP \
    -user $TOMCAT_USER \
    -home $JAVA_HOME \
    -wait 10 \
    -pidfile $PID_FILE \
    -outfile $CATALINA_BASE/logs/catalina.out \
    -errfile $CATALINA_BASE/logs/catalina.out \
    $JAVA_OPTS $JMX_OPTS \
    -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager \
    -Djava.util.logging.config.file=$CATALINA_BASE/conf/logging.properties \
    -Dcatalina.home=$CATALINA_HOME \
    -Dcatalina.base=$CATALINA_BASE \
    -Djava.io.tmpdir=$CATALINA_BASE/temp \
    -cp $CLASSPATH \
    org.apache.catalina.startup.Bootstrap start 2>/dev/null 1>&2
  RETVAL=$?
  if [ 0 -eq $RETVAL ]; then
    touch $LOCK_FILE
    log_end_msg 0
  else
    log_end_msg 1
  fi
}

stop() {
  # Stop tomcat
  log_daemon_msg "Stopping Apache Tomcat"
  $DAEMON_APP \
    -stop \
    -pidfile $PID_FILE \
    org.apache.catalina.startup.Bootstrap 2>/dev/null 1>&2
  RETVAL=$?
  if [ 0 -eq $RETVAL ]; then
    rm -rf $LOCK_FILE
    log_end_msg 0
  else
    log_end_msg 1
  fi
}

restart() {
  stop
  sleep 5
  start
}

# See how we were called.
case "$1" in
  start)
    start
    ;;
  stop)
    stop
    ;;
  restart)
    restart
    ;;
  status)
    status $prog
    ;;
  condrestart)
    [ -f $LOCK_FILE ] && restart || :
    ;;
  *)
    log_action_msg "Usage: $0 {start|stop|restart|status|condrestart}"
    exit 1
esac

exit $?

You need to provide a lot more information:

1) How much RAM is available on the box? Is Tomcat the only thing running?
2) Is this a 32bit or 64bit VM?
3) How many CPU's/cores are on this box?
4) What major version of the jdk are you running? 1.4, 5, or 6?

The answers to those questions will allow you to set boundaries for the heap.

Once you get past that, questions about the application may need to be answered - how many objects are long-lived (ie cache), and how many are short lived (less than 5 seconds before they go out of scope).

These questions will tell us what % of the heap can be used for Eden, and what percent needs to be used for the old generation.

Update

Well, if your Tomcat is long-running, then adding the '-server' flag would likely be beneficial. Given your constraints, unless you know your apps inside and out, it's probably best to leave it up to ergonomics to determine the best ratios and collector. Java tuning is much more an art than it is a science. Start here: http://java.sun.com/javase/technologies/hotspot/gc/gc_tuning_6.html, then look for tools like GCHisto, and VisualGC to help you visualize what's going on inside the VM.