Linux – Does NTP Daemon Set the Host Timezone?

Short answer: you can't. Ports below 1024 can be opened only by root. As per comment - well, you can, using CAP_NET_BIND_SERVICE, but that approach, applied to java bin will make any java program to be run with this setting, which is undesirable, if not a security risk.

The long answer: you can redirect connections on port 80 to some other port you can open as normal user.

Run as root:

# iptables -t nat -A PREROUTING -p tcp --dport 80 -j REDIRECT --to-port 8080

As loopback devices (like localhost) do not use the prerouting rules, if you need to use localhost, etc., add this rule as well (thanks @Francesco):

# iptables -t nat -I OUTPUT -p tcp -d 127.0.0.1 --dport 80 -j REDIRECT --to-ports 8080

NOTE: The above solution is not well suited for multi-user systems, as any user can open port 8080 (or any other high port you decide to use), thus intercepting the traffic. (Credits to CesarB).

EDIT: as per comment question - to delete the above rule:

# iptables -t nat --line-numbers -n -L

This will output something like:

Chain PREROUTING (policy ACCEPT)
num  target     prot opt source               destination         
1    REDIRECT   tcp  --  0.0.0.0/0            0.0.0.0/0           tcp dpt:8080 redir ports 8088
2    REDIRECT   tcp  --  0.0.0.0/0            0.0.0.0/0           tcp dpt:80 redir ports 8080

The rule you are interested in is nr. 2, so to delete it:

# iptables -t nat -D PREROUTING 2

You should not be using a NTP server from a different time zone. That server is in St. Louis and the physical distance will make a difference. It's pretty widely recommended to use NTP.org's pool for your NTP servers.

Regardless, NTP does not set your Time Zone (NTP actually only communicates in UTC, the protocol is only vaguely aware of what time zone the server is in). If your Time Zone settings are not sticking then you must have another process (possibly GPO) that is changing it.