You may be running in to an unfortunate effect of the Supermicro BMC firmware. When power is applied to the power supply, the BMC powers on immediately. During the boot process the BMC (via Uboot which is booting Linux on the BMC) checks to see if the dedicated IPMI NIC port sees a link state. If not, the shared NIC port will be used. The NIC port selected at BMC boot time will be the NIC port used until the BMC is power cycled, either through a direct BMC reboot or when power is removed from the power supply. Rebooting the system itself will do nothing to the BMC.
This creates a cabling time race condition between plugging in the dedicated IPMI NIC and the power cable which is very obnoxious. Or, for example, if you have a power outtage and the BMC comes up before the switch does, the BMC will select the shared NIC in spite of the dedicated NIC being wired and LAN IPMI access will, in the case of VLANed ports, will be on the wrong network. We experience this more often than we like and find it quite frustrating.
If you were able (which, you won't be able to if the BMC comes up on the "wrong" NIC) to connect over the LAN you could SSH to the BMC using the ADMIN account (default password "ADMIN). When logged on to the BMC via SSH you can see the effect of the Uboot time decision in the command line as shown by the usencsi= option at the end of the command line:
# cat /proc/cmdline
root=/dev/ramdisk ro ip=none ramdisk_blocksize=4096 console=ttyS0,38400 rootfstype=cramfs bigphysarea=1025 usencsi=0
On my system (X8DTi-LN4F) usencsi=0 means "use the dedicated IPMI NIC."
Of course, this requires that you connect to the BMC via the LAN. I've looked pretty hard with the r1.05 firmware and can find no way to discern the selected NIC accessing IPMI from the host. I've just started to look at the r1.32 firmware for this system. In any case, I don't see your motherboard model listed on the SuperMicro IPMI firmware page here:
What's most frustrating about this is I know what two bytes I would like to hardwire in the BMC firmware letting us set the IPMI interface either to the dedicated NIC or shared NIC but as far as I can discern there is no setting allowing this.
Best Answer
How many systems are you looking to bootstrap and install in an unattended manner?
The tool I use for this is Cobbler, which handles the specific DNS/DHCP/TFTP/PXE portions of the installation with the correct image, based on the target host's MAC address. E.g. it would bypass any PXE selection menus.
You can have different server profile types and a form of modular kickstart files (snippets).
This sounds like the closest thing to what you're asking for.