Php – PECL command produces long list of errors

centos6pearpeclPHPphp-fpm

Currently running PHP 5.4 on CentOS 6.5.

I installed the webtatic php55w package then installed PEAR+PECL without issue along with redis and mongo through PECL.

Shortly after, I realized 5.5 is not compatible with the framework I was working with so I yum erased php55w and installed php54w in it's place.

Now the pecl command doesn't work at all. It just produces this really long string of errors every time I issue any pecl command (abbreviated…most repeated dozens of times):

Warning: Invalid argument supplied for foreach() in Command.php on line 259

Warning: Invalid argument supplied for foreach() in /usr/share/pear/PEAR/Command.php on line 259

...etc etc etc...

Notice: Undefined index: honorsbaseinstall in Role.php on line 180

Notice: Undefined index: honorsbaseinstall in Role.php on line 180

...etc etc etc...

Notice: Undefined index: installable in Role.php on line 145

Notice: Undefined index: installable in Role.php on line 145

...etc etc etc...

Notice: Undefined index: phpfile in Role.php on line 212

Notice: Undefined index: phpfile in Role.php on line 212

...etc etc etc...

Notice: Undefined index: config_vars in Role.php on line 49

Notice: Undefined index: config_vars in Role.php on line 49

...etc etc etc...

Warning: Invalid argument supplied for foreach() in PEAR/Command.php on line 259

Warning: Invalid argument supplied for foreach() in /usr/share/pear/PEAR/Command.php on line 259

...etc etc etc...

XML Extension not found

How can I fix this?

Best Answer

I came across this error after updating my PHP installation to 5.5.14, on RedHat EL v6. I had installed PHP via the Yum package manager, and then needed to re-install some of the PHP extensions I was using. In searching for tips on how to solve this issue, I came across this question, and now that I have discovered a working solution I wanted to share my findings here. Other suggestions I had found online which included erasing and re-installing PECL/PEAR and even my PHP installation did not solve this issue. Finally after some further research and reviewing the source code for PECL/PEAR I found the real cause. Hopefully what follows will be of help to others:

You may see this error when trying to run PECL if your PHP installation does not have XML enabled by default, but instead XML support is usually loaded into your PHP installation via a PHP extension module (this could occur if the ./configure --disable-xml flag was specified when building PHP from source, or if you installed PHP via various package managers where that build of PHP is configured to load XML via an extension module).

Notice how the last line of the error output from PECL is XML Extension not found – the reason this error is appearing is because when PECL tries to use its XMLParser.php class it fails because it cannot access the XML extension (it checks for the XML module using extension_loaded('xml') around line 259 of the XMLParser.php source), and because the XML module is unavailable, it cannot parse its configuration/settings files and outputs all of the other errors seen above.

The reason this issue occurs is due to the way that PECL operates. The PECL command itself is just a shell script, which first works out where PHP is installed on your system installation, and then calls PHP on the command line with a number of flags before providing the path to the main PECL PHP script file. The problem flag which the PECL shell script is using is the -n option, which tells PHP to ignore any php.ini files (and therefore PHP will not load any of the additional extensions your php.ini file specifies, including in this case XML).

One can see the impact of the -n flag by running the following two commands:

  • first try running php -m on the command line
  • then compare the output to php -n -m

You should not see the XML extension listed when you run the second command because the -n flag told PHP not to parse our php.ini file(s).

If you run vi `which pecl` on the command line you should see the contents of the PECL command (as noted above, its just a shell script), and if you inspect the last line, you will see something like this:

exec $PHP -C -n -q $INCARG -d date.timezone=UTC -d output_buffering=1 -d variables_order=EGPCS -d safe_mode=0 -d register_argc_argv="On" $INCDIR/peclcmd.php "$@"

You should see the -n flag listed between the -C and -q flags. If you edit the PECL shell script, omitting the -n flag you should now be able to run PECL again without issues.

Alternatively, you can recompile PHP from source making sure that the XML module is compiled into the PHP binary instead of being loaded from a PHP extension module at run-time. Obviously editing the PECL shell script to remove the -n flag will only fix the issue until PECL/PEAR gets re-installed, hopefully however the maintainers of PECL/PEAR can update their repo with this fix. Ensuring PHP is built with XML support compiled in, is however a long-term fix to the solution, but may not be ideal for everyone's circumstances.

Just for completeness, if you run vi `which pear` you will see a very similar shell script to the one that PECL uses, however the -n flag is missing from the command which calls PHP and as such the PEAR command is not subject to these same issues.