Ssh – Copy the rsa keys from one machine to another

Please don't delete the entire known_hosts file as recommended by some people, this totally voids the point of the warning. It's a security feature to warn you that a man in the middle attack may have happened.

I suggest you identify why it thinks something has changed, most likely an SSH upgrade altered the encryption keys due to a possible security hole. You can then purge that specific line from your known_hosts file:

sed -i 377d ~/.ssh/known_hosts

This deletes line 377 as shown after the colon in the warning:

/home/emerson/.ssh/known_hosts:377

Alternatively you can remove the relevant key by doing the following

ssh-keygen -R 127.0.0.1 (obviously replace with the server's IP)

Please DO NOT purge the entire file and ensure this is actually the machine you want to be connecting to prior to purging the specific key.

This is expected behaviour according to the man page of ssh_config:

 IdentityFile
         Specifies a file from which the user's DSA, ECDSA or DSA authentica‐
         tion identity is read.  The default is ~/.ssh/identity for protocol
         version 1, and ~/.ssh/id_dsa, ~/.ssh/id_ecdsa and ~/.ssh/id_rsa for
         protocol version 2.  Additionally, any identities represented by the
         authentication agent will be used for authentication.  

         [...]

         It is possible to have multiple identity files specified in configu‐
         ration files; all these identities will be tried in sequence.  Mul‐
         tiple IdentityFile directives will add to the list of identities
         tried (this behaviour differs from that of other configuration
         directives).

Basically, specifying IdentityFiles just adds keys to a current list the SSH agent already presented to the client.

Try overriding this behaviour with this at the bottom of your .ssh/config file:

Host *
  IdentitiesOnly yes

You can also override this setting on the host level, e.g.:

Host foo
  User bar
  IdentityFile /path/to/key
  IdentitiesOnly yes