Electronic – How is the crystal layout looking

The idea behind simmetry of crystal connections is that they would pick equal amount of EMI and majority of it would be cancelled out. As it was mentioned, in low-power application crystal is driven as weak as possible, so it might be very easy to disrupt it's generation.

32kHz crystal is the most sensitive.

Also, please add to your points that you need exactly 1 connection point from GND to caps. You cannot connect them to ground wire/plate in different places, because then current flowing on the ground wire/plate will generate non-compensated noice on the crystal.

My guess is that the inductor is probably not a major contributing factor to the failures. I say this because it's a inductor, and as such produces a magnetic field. The quartz in the crystal is not particularly magnetic. Second, you note that the inductor is shielded, so the external leakage field should be small. Still, the crystal output is pretty high impedance and induction could be adding a small voltage in series with it. This should be small and not much issue if the crystal is being driven properly with the right load caps.

I would look closely at the crystal circuit. This sounds like maybe you are using too low of a drive level setting or the load caps aren't right. What does the datasheet say the load capacitance of the crystal needs to be? What size cap do you have on each side? The chip driving the crystal may have different drive level settings if it's intended to run with a wide range of crystals. At 24 MHz you almost certainly should be using the highest drive level choice.

Look at the crystal driver output pin (input to crystal) with a high impedance probe. That should be a good strong signal. It could be sortof square wave looking with a bit rounded corners or nearly a sine wave. It should be a few Volts p-p, usually half the supply voltage or more. Check the frequency carefully to make sure it's not running on a harmonic. If it is, it's a indication one or both load caps aren't connected or are too low. Then look at the crystal output. That should be a nice 24 MHz sine wave at least a Volt p-p, preferably a little more. Does the unit suddenly work right when you put the scope probe on a crystal lead? If so, it's again missing, bad, or incorrect load caps.